PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.35519s0001.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 284aa    MW: 31260.8 Da    PI: 6.6387
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.35519s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.93.1e-074791553
                          HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS
                   HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53
                          + erE+ RRd++++ f eL + l ++    ++K +K+++L+ +++ +k+
  Araha.35519s0001.1.p 47 KAEREKLRRDKLKEQFLELGKALDPN----KPKSDKVSVLTDTIQMLKD 91
                          589********************998....89************99885 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.22E-1241112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.1034292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.20E-44596No hitNo description
Gene3DG3DSA:4.10.280.101.3E-1047113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.1E-54791IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.0E-64898IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0009507Cellular Componentchloroplast
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MDQAKEPKNC SESDFADDSS ASSSSSGHNL RAEMVVEVKK EAVCSRKAER EKLRRDKLKE  60
QFLELGKALD PNKPKSDKVS VLTDTIQMLK DVMNQVDRLK AEYATLSQES RELIQEKSEL  120
REEKATLKSD IEILNAQYQH RIRTMVPWIP HYSYPIPVVA ITQGQSRFIP YSASVNTLTE  180
QQASVQQHSS SSGASNKQDF KVKSLALDLV MNNNHSGQGN DHKDDVGLEL ELKVHASSSA  240
QQDVSGKEKK GSLTTTASSS NSYSSSQAVQ DSSPGTVNDI LKS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2516960.0AF251696.2 Arabidopsis thaliana putative transcription factor BHLH11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002869046.11e-161basic helix-loop-helix family protein
SwissprotQ8W2F21e-160BH011_ARATH; Transcription factor bHLH11
TrEMBLD7MBQ01e-161D7MBQ0_ARALL; Basic helix-loop-helix family protein
STRINGfgenesh2_kg.7__460__AT4G36060.21e-160(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23532762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36060.11e-124bHLH family protein